Instrumental Measurement
Instrumental Measurement
This application provides the way to upload scientific data, which are brought by instrumental measurements, to the main database. In this version, data from following instruments are available. The permission to upload each instrumental measurement data depends on user's role.
Users can upload plural data either one by one (on the Target Editor) or at one stroke (on the main window). Once data are uploaded, they can not be deleted from the database by this application. This application just overwrites them by uploading other data for the same objectives. (See Appendix A: Update condition for details.)
After starting the application, the Login dialog (Fig. 2.1) will appear and prompt you to enter your username and password.
Fig. 2.1 Login dialog
After logging in, the main window will open. If the entered username or/and password are invalid, an error dialog (Fig. 2.2) will appear and request that you login again.
Fig. 2.2 Login failure dialog - invalid username or password
To change your password, click the
button at the bottom right of the Login dialog.
The Change Password dialog will be displayed (Fig. 2.3).
Fig. 2.3 Change Password dialog
Type your login ID, your current password, a new password, and retype the new password. After filling all fields, click the "OK" button. When your password is accepted, the Login dialog will be activated. Otherwise an error dialog will be displayed.
On the main window, you can create/edit/remove Targets, which are data files with information to upload, and you can upload them to the database. Successful uploads will move data files from source folders to transferred folders which are specified as preferences. (See 4. Target Editors for details.) Transferred folders are placed for backup of data files uploaded to the database. You can also see and save logs in the main window.
Fig. 3.1 Main window
The main window consists of the Target Pane (upper pane) and the Log Pane (lower pane). You can adjust their sizes by dragging the separator. Or you can hide one of these panes and expand the other pane by clicking upward/downward the arrow buttons on the separator.
Select a data type of a Target to create from the list of the combo box in the upper left. Click the "Create" button. Then a Target Editor to edit a Target opens. The data type list depends on the role of the login user, and includes only the data types of which he/she has a right to edit.
Operations of a Target Editor depend on the data type of the Target to edit. Basic operation flow is, (1) Select data file(s) to upload, (2) Specify parameters, (3) Fix the edit of a Target. See 4. Target Editors for details.
After creation of a Target, a row of the Target will be added to the Target list in the main window. On the row, the data type of the Target, specified data file(s) , its status and existence on DB are displayed. Status column have four messages as follows.
On DB column have two messages as follows.
On a Target Editor, if a "Close" button is clicked, the status of the edited Target will be "ready" or "not ready". If an "Upload now" button is clicked, the status of the edited Target will be "succeeded" or "failed".
To edit an existing Target, select the row of the target to edit in the Target list, and click the "Edit" button in the upper right. A Target Editor will open. You can also open it by double clicking of the row of the target.
To remove an existing Target, select the row of the target to be removed in the Target list, and click the "Remove" button in the upper right.
There are two ways to upload Targets. One is an operation using a Target Editor. Clicking an "Upload now" button on a Target Editor uploads the editing Target. This operation can upload only one Target. See 4. Target Editors for more details.
To upload plural Targets, using the "Upload" button on the main window is convenient. To select multiple targets, press the Shift or Ctrl key and click a target by mouse. To press the Shift key means to select all targets between the first selected target and the last of it. And to press the Ctrl key means to select each clicked target. Also you can select targets by dragging from one target to the other target.
After selecting, click the "Upload" button. Then the selected Targets will be uploaded to the database, and their statuses will change to "succeeded" or "failed".
Successful uploads move their data files from the source folders to the transferred folders. The upload failures might occur when you have tried to upload the Target existing on the database. Check the application log for the failure reason. To overwrite existing data, check the "allows to overwrite" check box in the main window. This setting about overwriting is valid for uploads in Target Editors, too.
Clicking the "Refresh" button updates the Target list. It deletes Targets in the status of "succeeded", and changes the statuses of Targets in the status of "failed" into the "ready". Targets in the status of "ready" and "not ready" stay as they are.
The application logs will be displayed on the Log Pane. Error logs help you to find reasons of errors. You can also see results of uploads here.
For detail logs, save logs to a file. Specify a log file path into the bottom field by clicking "..." button, and check the "writes log to file" check box. Logs will be appended to the file. If the file doesn't exist, the application will create it.
"Batch Process" button offers convenient function which Targets are created at once. However this function is not available to some instruments.(table.3.1) To use the "Batch Process" button, you should confirm the preference using the "Batch Preference" button.
Table.3.1 Table of Instrumental Measurements
| can batch process perfectly | can batch process half | can not batch process |
|---|---|---|
| Pass-through type Magnetometer | CHNS/O Element Analyzer | Gas Chromatography(ECD/FID/NGA/TCD,FID) |
| Spectrophotometer | Coulometer | Gas Mass Spectrometer |
| Spinner Magnetometer | Image Line Scanner | ICP Mass Spectrometer |
| Whole Core MSCL | Kappabridge | Liquid Chromatography |
| X-ray CT Scanner | Split Core MSCL | Thermal Conductivity |
| XRF Core Logger | Interstitial Water | |
| CSV File | Moisture and Density | |
| MAD Beaker | ||
| Delete CSV File |
each column means.
"Batch Preference" button offers the same function which Preference Dialog of each Instrumental Measurement have. See clauses correspond to their "set preference"
Each of the Target Editors depends on the data type of the editing Target. Basic operation flow is, (1) Select data file(s) to upload, (2) Specify parameters, (3) Fix the edit of a Target.
The operations to select a Target and specify parameters depend on each of the data types. They are mentioned below.
There are two ways to fix the edit. One way is clicking a "Close" button. This operation closes the Target Editor and activates the main window. If the edited Target is new, the Target will be added to the Target list in the main window. Otherwise the row of the Target in the list will be updated. This operation doesn't upload the Target to the database. You can upload the Target together with other Targets at a time by the operation of the main window.
The other way to fix the edit is clicking an "Upload now" button. This operation uploads the edited Target to the database, closes the Target Editor, and activates the main window. Result of the upload will be displayed on the row of the Target list in the main window.
Clicking a "Preferences" button opens a Preferences dialog. This is the dialog to modify preferences. Preferences are information on locations of source folder(s) and transferred folder(s). To make a file list displayed in a combo box on a Target Editor, the application refers to the specified source folder, and picks up files with the specified suffix. After successful uploading, the application moves data files to the specified transferred folder.
The default values of suffixes depend on data types. You should set different folders for a source folder and a transferred folder, respectively. Once user set preferences, the application memorizes them.
To complete a Target of "Whole core MSCL", select a data file and specify its date and information of calibration.
Fig. 4.1.1 Target Editor - Whole core MSCL
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "run information" pane, the "date and time" spinner field and the "comment" field will be activated, and data will be shown on the table in the "loaded data" pane. The last modified date of the selected data file will be set into the "date and time" spinner field. Adjust the date, if necessary.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.1.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.1.2). Check the data file format.
Fig. 4.1.2 Whole core MSCL Loading error dialog
Click the "calib. file" combo box in the "calibration" pane, and select a calibration file from the list. Click the "Load" button to load information of the selected calibration file. Then the "date and time" spinner field and the "comment" field in the "calibration" pane will be activated. The last modified date of the selected calibration file will be set into the "date and time" spinner field. Adjust the date, if necessary.
When you can't find the objective file in the calibration file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.1.2. Set preferences).
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.1.3) Preferences are information of data files and calibration files.
Fig. 4.1.3 Whole core MSCL Preferences dialog
The "run data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".xml". Once user set these preferences, the application memorizes them.
The "calibration file" preferences describe calibration files. Click the "..." button next to the "source folder" field to specify the folder on which calibration files have been placed. Specify the suffix of calibration files into the "file name suffix" field.
Since calibration files stay in the source folder even after uploading, setting of a transferred folder is not needed for calibration files.
The default value of the "file name suffix" is ".xls". Once user set these preferences, the application memorizes them.
To complete a Target of "Split core MSCL", select a data file and specify its date and information of calibration.
Fig. 4.2.1 Target Editor - Split core MSCL
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "run information" pane, the "date and time" spinner field and the "comment" field will be activated, and data will be shown on the table in the "loaded data" pane. The last modified date of the selected data file will be set into the "date and time" spinner field. Adjust the date, if necessary.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.2.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.2.2). Check the data file format.
Fig. 4.2.2 Split core MSCL Loading error dialog
Click the "calib. file" combo box in the "calibration" pane, and select a calibration file from the list. Click the "Load" button to load information of the selected calibration file. Then the "date and time" spinner field and the "comment" field in the "calibration" pane will be activated. The last modified date of the selected calibration file will be set into the "date and time" spinner field. Adjust the date, if necessary.
When you can't find the objective file in the calibration file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.2.2. Set preferences).
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.2.3). Preferences are information of data files and calibration files.
Fig. 4.2.3 Split core MSCL Preferences dialog
The "run data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".xml". Once user set these preferences, the application memorizes them.
The "calibration file" preferences describe calibration files. Click the "..." button next to the "source folder" field to specify the folder on which calibration files have been placed. Specify the suffix of calibration files into the "file name suffix" field.
Since calibration files stay in the source folder even after uploading, setting of a transferred folder is not needed for calibration files.
The default value of the "file name suffix" is ".xls". Once user set these preferences, the application memorizes them.
To complete a Target of "Spectrophotometer", select a data file and specify its date.
Fig. 4.3.1 Target Editor - Spectrophotometer
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "run information" pane, the "date and time" spinner field and the "comment" field will be activated, and data will be shown on the table in the "loaded data" pane. The last modified date of the selected data file will be set into the "date and time" spinner field. Adjust the date, if necessary.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.3.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.3.2). Check the data file format.
Fig. 4.3.2 Spectrometer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.3.3). Preferences are information of data files.
Fig. 4.3.3 Spectrophotometer Preferences dialog
The "run data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".xml". Once user set these preferences, the application memorizes them.
In order to encode an image data, install Java Advanced Imaging Image I/O Tools (See The System Requirements: Java Advanced Imaging Image I/O Tools).
To complete a Target of "Image line scanner", select a meta data file and an image file and encode specified image data.
Fig. 4.4.1 Target Editor - Image line scanner
Click the "meta data file" and the "image file" combo box, and select a file to upload from each list, respectively. Click the "Load" button to load information of the selected file. Then in the "image encoding options" pane, the "encoding type" combo box, the "image size" slide bar and the "Encode" button will be activated, and data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in a data file list shown in each combo box, modify the preferences in the Preferences dialog (See 4.4.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.4.2). Check the data file format.
Fig. 4.4.2 Image line scanner Loading error dialog
Click the "encode" button in the "image encoding options" pane to encode the specified image data. The encoded image which meets specified conditions will be displayed on the "preview" pane. If necessary, adjust its encoding type, compression quality and image size.
The "Compression quality" field and the slide bar is active when the encoding type is "jpeg".
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.4.3) Preferences are information of meta data files and image files.
Fig. 4.4.3 Image line scanner Preferences dialog
The "meta data file" preferences describe meta data files. Click the "..." button next to the "source folder" field to specify the folder on which meta data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which meta data files will be moved. Specify the suffix of meta data files into the "file name suffix" field.
The default value of the "file name suffix" is ".img". Once user set these preferences, the application memorizes them.
The "image file" preferences describe image files. Click the "..." button next to the "source folder" field to specify the folder on which image files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which image files will be moved. Specify the suffix of image files into the "file name suffix" field.
The default value of the "file name suffix" is ".bmp". Once user set these preferences, the application memorizes them.
To complete a Target of "Pass through type magnetometer", select a data file.
Fig. 4.5.1 Target Editor - Pass through type magnetometer
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.5.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.5.2). Check the data file format.
Fig. 4.5.2 Pass through type magnetometer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.5.3). Preferences are information of data files.
Fig. 4.5.3 Pass through type magnetometer Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".tsv". Once user set these preferences, the application memorizes them.
To complete a Target of "Kappabridge", select a data file and specify its sample ID and date.
Fig. 4.6.1 Target Editor - Kappabridge
Click the "data file" combo box, and select a data file to upload from the list. Then click the "Load" button to load information of the selected data file. After loading data file, enter sample ID into "sample ID" field. By entering a sample ID which is already registered on database, the table displays information of the sample at "objective" column. Then adjust date and time at "date and time" field, if neccessary. The last modified date of the selected data file will be initially set into that field.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.6.2. Set preferences).
In case the "sample ID" spinner field is blank or filled with an invalid sample ID, clicking the "Load" button will result in the message "not available" on the table in the "loaded data" pane (Fig. 4.6.2). Input an available sample ID into the "sample ID" spinner field.
Fig. 4.6.2 Target Editor before putting a sample ID - Kappabridge
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.6.3). Check the data file format.
Fig. 4.6.3 Kappabridge Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.6.4). Preferences are information of data files.
Fig. 4.6.4 Kappabridge Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".txt". Once user set these preferences, the application memorizes them.
To complete a Target of "CHNS/O element analyzer", select two data files, a concentration data file and an area data file.
Fig. 4.7.1 Target Editor - CHNS/O element analyzer
Click the "conc. data file" combo box, and select a concentration data file to upload from the list. In the same way, set an area data file into the "area data file" combo box. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.7.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.7.2). Check the following;
Fig. 4.7.2 CHNS/O element analyzer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.7.3). Preferences are information of concentrate data files, area data files, and chromatogram data files.
Fig. 4.7.3 CHNS/O element analyzer Preferences dialog
The "conc. data file" preferences describe concentration data files. Click the "..." button next to the "source folder" field to specify the folder in which area data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which area data files will be moved. Specify the suffix of area data files into the "file name suffix" field.
The default value of the "file name suffix" is ".xls". Once user set these preferences, the application memorizes them.
The "area data file" preferences describe area data files. Specify each field of "source folder", "transferred folder", and "file name suffix" like "conc. data file" preferences.
The default value of the "file name suffix" is ".xls". Once user set these preferences, the application memorizes them.
The "chromatogram data file" preferences describe chromatogram data files. Specify the suffix of chromatogram data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
To complete a Target of "Coulometer", select a data file and specify its sample ID and weight.
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "loaded data" pane, data will be shown on the table but "objective" and "conc.(wt%)" field is not available, and the "sample ID" and the "weight(g)" field will be activated (Fig. 4.8.1).
Fig. 4.8.1 Target Editor before setting a sample ID and weight - Coulometer
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.8.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.8.2). Check the data file format.
Fig. 4.8.2 Coulometer Loading error dialog
Input a sample ID into the "sample ID" field to make "objective" field available. If the invalid sample ID is set, the "objective" field remain "not available".
You also input sample's weight value into the "weight(g)" field to make the "conc.(wt%)" field available. If it is not numerical value, the "weight(g)" field remain "not available".
After all data become available, the "Upload now" button will be activated (Fig.4.8.3).
Fig. 4.8.3 Target Editor after setting a sample ID and weight - Coulometer
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.8.4). Preferences are information of data files.
Fig. 4.8.4 Coulometer Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder in which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
To complete a Target of "X-ray CT-scanner",select a data file.
Fig. 4.9.1 Target Editor - X-ray CT-scanner
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.9.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.9.2). Check the data file format.
Fig. 4.9.2 X-ray CT-scanner Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.9.3) Preferences are information of data files.
Fig. 4.9.3 X-ray CT-scanner Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder on which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".dcm". Once user set these preferences, the application memorizes them.
To complete a Target of "XRF core logger",select a data file.
Fig. 4.10.1 Target Editor - XRF core logger
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.10.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.10.2). Check the data file format.
Fig. 4.10.2 XRF core logger Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.10.3) Preferences are information of data files.
Fig. 4.10.3 XRF core logger Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder on which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
To complete a Target of "Spinner Magnetometer", select a data file.
Fig. 4.11.1 Target Editor - Spinner Magnetometer
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.11.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.11.2). Check the data file format.
Fig. 4.11.2 Spinner Magnetometer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.11.3) Preferences are information of data files.
Fig. 4.11.3 Spinner Magnetometer Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder on which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".tsv". Once user set these preferences, the application memorizes them.
To complete a Target of "Gas Chromatography(ECD/FID/NGA/TCD,FID)", select a header file and a data file.
Fig. 4.12.1 Target Editor - Gas Chromatography(ECD/FID/NGA/TCD,FID)
Click the "header file" combo box, and select a header file to upload from the list. Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "information" pane, the "sample ID" field and the "comment" area will be activated, and data will be shown on the table in the "loaded data" pane. The sample ID of the selected header file will be set into the "sample ID" field. Adjust it, if necessary. Also you can attach files which help to show data more concretely. Click "Add attachment files" button.(See 5. Attachment Files Chooser)
When you can't find the objective file in the header file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.12.2. Set preferences).
In case the "sample ID" field is blank or filled with an invalid sample ID, You should enter sample ID which is already registered on database.
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.12.2). Check the data file format.
Fig. 4.12.2 Gas Chromatography(ECD/FID/NGA/TCD,FID) Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.12.3). Preferences are information of header files.
Fig. 4.12.3 Gas Chromatography(ECD/FID/NGA/TCD,FID) Preferences dialog
The "header file" preferences describe header files. Click the "..." button next to the "source folder" field to specify the folder in which header files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which header files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
To complete a Target of "Gas Mass Spectrometer", select a header file.
Fig. 4.13.1 Target Editor - Gas Mass Spectrometer
Click the "header file" combo box, and select a header file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "information" pane, the "sample ID" field and the "comment" area will be activated, and data will be shown on the table in the "loaded data" pane. The sample ID of the selected header file will be set into the "sample ID" field. Adjust it, if necessary. Also you can attach files which help to show data more concretely. Click "Add attachment files" button.(See 5. Attachment Files Chooser)
When you can't find the objective file in the header file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.13.2. Set preferences).
In case the "sample ID" field is blank or filled with an invalid sample ID, You should enter sample ID which is already registered on database.
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.13.2). Check the data file format.
Fig. 4.13.2 Gas Mass Spectrometer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.13.3). Preferences are information of header files.
Fig. 4.13.3 Gas Mass Spectrometer Preferences dialog
The "header file" preferences describe header files. Click the "..." button next to the "source folder" field to specify the folder in which header files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which header files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".txt". Once user set these preferences, the application memorizes them.
To complete a Target of "ICP Mass Spectrometer", select a header file.
Fig. 4.14.1 Target Editor - ICP Mass Spectrometer
Click the "header file" combo box, and select a header file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "information" pane, the "sample ID" field and the "comment" area will be activated, and data will be shown on the table in the "loaded data" pane. The sample ID of the selected header file will be set into the "sample ID" field. Adjust it, if necessary. Also you can attach files which help to show data more concretely. Click "Add attachment files" button.(See 5. Attachment Files Chooser)
When you can't find the objective file in the header file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.14.2. Set preferences).
In case the "sample ID" field is blank or filled with an invalid sample ID, You should enter sample ID which is already registered on database.
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.14.2). Check the data file format.
Fig. 4.14.2 ICP Mass Spectrometer Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.14.3). Preferences are information of header files.
Fig. 4.14.3 ICP Mass Spectrometer Preferences dialog
The "header file" preferences describe header files. Click the "..." button next to the "source folder" field to specify the folder in which header files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which header files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".txt". Once user set these preferences, the application memorizes them.
To complete a Target of "Liquid Chromatography", select a header file and three data files.
Fig. 4.15.1 Target Editor - Liquid Chromatography
Click the "header file" combo box, and select a header file to upload from the list. Click the "data file1" combo box, and select first data file to upload from the list. Click the "data file2" combo box, and select second data file to upload from the list. Click the "data file3" combo box, and select third data file to upload from the list. Click the "Load" button to load information of the selected data file. Then in the "information" pane, the "sample ID" field and the "comment" area will be activated, and data will be shown on the table in the "loaded data" pane. The sample ID of the selected header file will be set into the "sample ID" field. Adjust it, if necessary. Also you can attach files which help to show data more concretely. Click "Add attachment files" button.(See 5. Attachment Files Chooser)
When you can't find the objective file in the header file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.15.2. Set preferences).
In case the "sample ID" field is blank or filled with an invalid sample ID, You should enter sample ID which is already registered on database.
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.15.2). Check the data file format.
Fig. 4.15.2 Liquid Chromatography Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.15.3). Preferences are information of header files.
Fig. 4.15.3 Liquid Chromatography Preferences dialog
The "header file" preferences describe header files. Click the "..." button next to the "source folder" field to specify the folder in which header files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which header files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
To complete a Target of "Thermal Conductivity", select a header file and a probe type, and specify its section ID, top interval and bottom interval.
Fig. 4.16.1 Target Editor before setting section ID , top interval and bottom interval - Thermal Conductivity
Click the "header file" combo box, and select a header file to upload from the list. Click the "probe type" combo box, and select probe type from the list. Click the "Load" button to load information of the selected data file. Then in the "information" pane, the "section ID" field will be activated, and data will be shown on the table in the "loaded data" pane. After loading data file, enter section ID into "section ID" field. By entering a section ID which is already registered on database, the "top interval" field and "bottom" field will be activated. Specify them. Also you can attach internal standards which help to show data more concretely. Click "Add internal standards" button.(See 5. Attachment Files Chooser)
Fig. 4.16.2 Target Editor after setting section ID , top interval and bottom interval - Thermal Conductivity
When you can't find the objective file in the header file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.16.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.16.2). Check the data file format.
Fig. 4.16.2 Thermal Conductivity Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.16.3). Preferences are information of header files.
Fig. 4.16.4 Thermal Conductivity Preferences dialog
The "header file" preferences describe header files. Click the "..." button next to the "source folder" field to specify the folder in which header files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which header files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".dat". Once user set these preferences, the application memorizes them.
To complete a Target of "Interstitial Water", It is necessary to surely input SampleID, subject, value, unit, and equipment. Status will be set to "Ready" if these are set correctly. It is "Not ready" if imperfect. A data file does not need.
Fig. 4.17.1 Target Editor before input value - Interstitial Water
Please input sampleID and value. Please choose unit (pH / pmH / mM / µM) and equipment (Alkalinity Titrator System / Other Titrator System / UV & visible spectrophotometer). Please choose subject or add new subject. It can enter, if there is comment. If the "Add attachment files" button is pushed, the "Attachment Files Chooser" dialog can open and a file can be appended. (See 5. Attachment Files Chooser)
Fig. 4.17.2 Target Editor after setting values. "Ready" - Interstitial Water
After uploading, the place which copies an attached file is set up in the Preference dialog. (See 4.17.2. Set preferences).
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog (Fig. 4.17.3). Preferences are information about the attached file to copy.
Fig. 4.17.3 Interstitial Water Preferences dialog
The "attached file" preferences describe attached files. Click the "..." button next to the "transferred folder" field to specify the folder to which attached files will be copied.
Once user set these preferences, the application memorizes them.
There are two way to complete a Target of "Moisture and Density". The one is to enter values manually, and the other is to enter from moisture and density file.
Checking "manual entry of data" radio button enables "Add Row" button and sets the Target Editor to manual entry mode.
Clicking the "Add Row" button adds empty line that has editable fields. The fields "sample id", "method", "beaker id(measured wet sample)", "beaker id(measured dry sample)", "total mass(Beaker & Wet sample)" and "dry mass(Beaker & dry sample)" must be entered. Beaker ids must have been entered from "MAD Beaker" target editor. The field "total volume(Beaker & Wet sample)" is also required to enter when the method "A" or "B" is chosen, and the field "dry volume(Beaker & dry sample)" is also required when the method "C" is chosen. The fields "attach file" and "comment" are optional. To append attachment files to a record, opens attachment file chooser by clicking the button on the "attach files" column (See 5. Attachment Files Chooser). The values calcurated from entered values are shown under the table (see Calcuration rules).
Fig. 4.18.1 Target Editor - Moisture and Density (manual entry of data)
Checking "read from data file" radio button enables "file selector" combobox and sets the Target Editor to read from data file mode. The specification of the file is shown in the J-CORES Moisture and Density File Format.
The file selector shows the moisture and density files which are in the directory specified at the preferences dialog. Clicking "Load" button reads the chosen file and parses its lines to moisture and density data. The parsed data are set onto the table. Unlike the manual entry mode, the lines in the table are not editable in this mode. The values calcurated from entered values are also shown under the table (see Calcuration rules).
Fig. 4.18.2 Target Editor - Moisture and Density (read from data file)
The status "ready" and "exists on DB" enable data to be uploaded. The status "not ready" prevents to upload and disables "Upload now" button. The not ready status is invoked by follows.
Fig. 4.18.3 Target Editor - Moisture and Density (not ready)
Clicking "Upload now" button uploads all of the data shown on the table and closes the target editor. The another way to upload data is uploading from main window. Clicking "Close" button closes the target editor window without uploading data, and updates the editing target in the target list on the main window. Clicking "Upload" button in the main window with choosing the target uploads the edited data. To learn more about uploading with main window, see 3.2 Upload Targets.
When the upload success, the uploaded files (includes moisture and disity file and attached files) are copied to the directories specified in the preferences dialog (See 4.18.2. Set preferences).
Table.4.18.1 constant values
| Density of water | Dw = 1.000 |
| Density of pore water | Dpw = 1.024 |
| Density of salt | Dsalt = 2.22 |
| Salinity of pore water | s = 0.035 |
| Water ratio | r = 0.988 |
Table.4.18.2 primary calcurations
| Method A or B | Method C | |
|---|---|---|
| Total mass (Wet sample) | Mt = Total mass (Beaker & Wet sample) - Beaker mass(measured wet sample) | |
| Dry mass (Dry sample) | Md = Dry mass (Beaker & Dry sample) - Beaker mass(measured dry sample) | |
| Total volume (Wet sample) | Vt = Total volume (Beaker & Wet sample) - Beaker volume (measured wet sample) | |
| Dry volume (Dry sample) | Vd = Dry volume (Beaker & Dry sample) - Beaker volume (measured dry sample) | |
Table.4.18.3 calculation rule
| Method A or B | Method C | |
|---|---|---|
| Mass of porewater | Mpw = (Mt - Md) / (1 - s) | |
| Volume of porewater | Vpw = Mpw / Dpw | |
| Volume of solids | Vs = Vt - Vpw | Vs = Vd - Vsalt |
| Total volume | prepared value | Vt = Vd - Vsalt + Vpw |
| Dry volume | Vd = Vs + Vsalt | prepared value |
| Mass of salt | Msalt = Mpw - (Mt - Md) | |
| Volume of salt | Vsalt = Msalt / Dsalt | |
| Mass of solids | Ms = Md - Msalt | |
| Water content 1 (wet) | WW = Mpw / Mt | |
| Water content 2 (dry) | WD = Mpw / Ms | |
| Bulk density | BD = Mt / Vt | |
| Dry density | DD = Ms / Vt | |
| Grain density | GD = Ms / Vs | |
| Porosity | PO = Vpw / Vt | |
| Void ratio | VR = Vpw / Vs | |
The preferences can be modified on the Preferences dialog (Fig. 4.18.4). Directory where moisture and density files exists, directory where moisture and density files are transferred and directory where attachment files are transferred are set in this dialog. The suffix for moisture and density files is also set in this dialog.
Fig. 4.18.4 Moisture and Density Preferences dialog
The "attached file" preferences describe attached files. Click the "..." button next to the "transferred folder" field to specify the folder to which attached files will be copied.
Once user set these preferences, the application memorizes them.
To complete a Target of "MAD Beaker", It is necessary to surely input beaker ID, beaker type, beaker mass and beaker volume. Status will be set to "ready" or "update" if these are set correctly. It is "Not ready" if imperfect. A data file does not need. Therefore don't need to set preference.
Fig. 4.19.1 Target Editor before input value - MAD Beaker
Please input beaker ID, beaker type, beaker mass and beaker volume. All the value are inputed, status column will be "ready". If inputed beaker ID is in DB, status column will be "update". Already when inputting it in the table, you can't use "Query" button.(Fig.4.19.2) If you want to update only, you'd better use "Query" button. It is not possible to use "Add Row" and "Del Row" at this time.(Fig.4.19.3) And don't forget check "allows to overwriting" in the main window. Please push "Discard" button to initialize the table. When "Discard" button is pushed, "Query" button, "Add Row" button, and "Del Row" button are activated. (Fig.4.19.1)
Fig. 4.19.2 Target Editor after setting values.(not use "Query" button) - MAD Beaker
Fig. 4.19.3 Target Editor after setting values.(use "Query" button) - MAD Beaker
To upload data, all the status should be "ready" or "update"(space is ignored).
Just to stop and to fix the edit, click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
To complete a Target of "CSV File", select a data file.
Fig. 4.20.1 Target Editor - CSV File
Click the "data file" combo box, and select a data file to upload from the list. Click the "Load" button to load information of the selected data file. Then data will be shown on the table in the "loaded data" pane.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.20.2. Set preferences).
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.20.2). Check the data file format. (See CSV File Format).
Fig. 4.20.2 CSV File Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The record will be updated if a file which has same title is already in the database. Notice that the update will run with series name, not title. That is, when csv file titled "A" with series "a" and "b" is on the database, and csv file titled "A" with series "a" and "c" is entered with Uploader application, the series for "A" on the database will become "a", "b" and "c".
The preferences can be modified on the Preferences dialog.(Fig. 4.20.3) Preferences are information of data files.
Fig. 4.20.3 CSV File Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder on which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The default value of the "file name suffix" is ".csv". Once user set these preferences, the application memorizes them.
An appropriate action can be set in this dialog in the case of a CSV file had lines which depths are beyond the section interval (that means depth of a line is negative or greater than the curated length of the section). The options are shown on the table.4.20.1.
Table.4.20.1 Options for the lines beyond the section interval.
| option | definition | CSV file status and upload results. | |||
|---|---|---|---|---|---|
| The CSV file has data lines and all lines are on the section interval. | The CSV file has data lines and some lines are on the section interval. Others are beyond. | The CSV file has data lines and all lines are beyond the section interval. | The CSV file has no data lines. | ||
| Trim. Lines on the section interval will be uploaded. | Only lines on the section interval will be uploaded. Lines beyond the section interval will be ignored and not uploaded. | o | * | x | x |
| Accept. All lines will be uploaded. | All lines will be uploaded without checking their depth relative to section interval. | o | o | o | x |
| Prevent. No lines will be uploaded. | Upload will succeed when all lines are on the section interval. Otherwise fail. | o | x | x | x |
From the beginning, Data has already been taken from DB and it displays it in the table. Also if the data was empty, it displays empty. A data file does not need. Therefore don't need to set preference.
Fig. 4.21.1 Target Editor before selecting data - Delete CSV File
Please select deleting data in the table. To select multiple data, press the Shift or Ctrl key and click a data by mouse. To press the Shift key means to select all data between the first selected data and the last of it. And to press the Ctrl key means to select each clicked data. Also you can select data by dragging from one target to the other target. Please push "Prepare to delete" button to delete selected ones in the table. If you don't push "Upload Now" button, it will not be deleted from DB.
Fig. 4.21.2 Target Editor after selecting data - Delete CSV File
Just to stop and to fix the edit, click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
To complete a Target of "XRD", select a data file.
Fig. 4.22.1 Target Editor - XRD
Click the "data file" combo box, and select a data file to upload from the list.
Click the "Load" button to load information of the selected data file.
It exists in the same place as a data file, and the name of the file of the same name as a data file is displayed on the "automatic attached file" panel.
The file name suffix of these files is an file name suffix set up by Preferences dialog.
And these files are registered as an attached file.
If the item of sample ID is in the contents of a data file, it will be displayed on the text field.
Sample ID can be edited on the text field.
It will become a bold letter if it is Sample ID which exists in a DB.
When you can't find the objective file in the data file list shown in the combo box, modify the preferences in the Preferences dialog (See 4.22.2. Set preferences).
Also you can attach files which help to show data more concretely. Click "Add attachment files" button.(See 5. Attachment Files Chooser)
While loading the data file, the application checks the format of the data. If the validation failed, an error dialog appears (Fig. 4.22.2).
Fig. 4.22.2 XRD Loading error dialog
Just to stop and to fix the edit , click the "Close" button. The main window will be activated and the Target in the Target list will be updated.
Or to upload the Target immediately, click the "Upload now" button. The Target will be uploaded to the database and the Target Editor will be closed. Check the upload status displayed in the Target list of the main window.
The preferences can be modified on the Preferences dialog.(Fig. 4.22.3) Preferences are information of data files.
Fig. 4.22.3 XRD Preferences dialog
The "data file" preferences describe data files. Click the "..." button next to the "source folder" field to specify the folder on which data files have been placed. Click the "..." button next to the "transferred folder" field to specify the folder to which data files will be moved. Specify the suffix of data files into the "file name suffix" field.
The file name suffix of the attached file which it is automatic and is set by "file name suffix" of the "attchment files" field can be set up. When "file name suffix" is plurality, please divide and enter with a ",".
The default value of the "file name suffix" is ".RD" and ".ASC". Once user set these preferences, the application memorizes them.
This window provides the way to attach addtional file(s), which are selected by users, to the main database. In this version, the following instruments are available.
Basic operation flow is, (1) Select a directory, (2) Select files to attach, (3) Move files, (4) Fix files selection.
Fig. 5.1 Attachment Files Chooser
Attachment Files Chooser consists of the Source Files Pane (left pane) and the Upload Files Pane (right pane). You can adjust the size by dragging the each side.
Click the "..." button next to the "directory" field
to specify the folder in which additional files have been placed.
Then file list will be shown in lower left pane.
Select files to attach, and Click
To fix files selection, click the "ok" button at the lower right of this window. This operation will attach the moved files in Upload Files Pane and close the window. If you select incorrect file(s), use the "remove" button upper the "ok" button.
Just to stop and to cancel , click the "cancel" button beside the "ok" button. This operation won't attach the moved files in Upload Files Pane and close the window.
Update condition of each instrumental measurement is shown belows.
Table of update condition
| Name | Condition |
|---|---|
| Pass-through type magnetometer | same section id and demagnetization level, or same sample id and demagnetization level |
| CHNS/O Element Analyzer | same sample id |
| Gas Chromatography(ECD/FID/NGA/TCD,FID) | same sample id |
| Spectrophotometer | same section id |
| Coulometer | same sample id |
| Gas Mass Spectrometer | same sample id |
| Spinner Magnetometer | same sample id and demagnetization level |
| Image Line Scanner | same section id |
| ICP Mass Spectrometer | same sample id |
| Whole Core MSCL | same section id |
| Kappabridge | same sample id |
| Liquid Chromatography | same sample id |
| X-ray CT Scanner | same section id |
| Split Core MSCL | same section id |
| Thermal Conductivity | same section id and top interval |
| XRF Core Logger | same section id or same sample id |
| Interstitial Water | same sample id, system name and subject name |
| Moisture and Density | same sample id and method |
| MAD Beaker | same beaker id |
| CSV file | same title and the identifier of section, hole or seismic shot point |
| XRD | same sample id |